. 7. These measures are useful to determine whether the coocurrence of two random events is meaningful. D = pdist2 (X,Y,Distance,DistParameter,'Largest',K) computes the distance using the metric specified by Distance and DistParameter and returns the K largest pairwise distances in descending order. Different behaviour for pdist and pdist2. Follow answered Feb 25, 2019 at 17:02. Two sets of matrix. 0. Turner, Don Thompson. % accept a matrix ZJ with an arbitrary number of observations. The toolbox lets you process and customize data using trimming, interpolation, resampling, coordinate transformations, and other techniques. I would like to use the command pdist2 in order to compute distance between two geographical coordinates. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. minDistance = 0. Pair distribution functions were calculated using Matlab’s ‘pdist2’. 52181708330649 5. distance. Now I want to create a mxn matrix such that (i,j) element represents the distance from ith point of mx2 matrix to jth point of nx2 matrix. Theme. Copy. . de 2022 I'm trying to use the pdist2 function and keep getting this error: "??? Undefined function or method 'pdist2'. If I answered with something as broad as you have asked, I would say "using diff or subtracting one vector from another". An m A by n array of m A original observations in an n -dimensional space. The problem is that Matrix<double, 3, 5> and MatrixXT<double> are not the same type, therefore, the only way to pass the former to pdist2 is to convert it to a MatrixXT<double>. remoteBlockExecution (line 15) Worker 11: Warning: Converting input data to double. Categorizing query points based on their distance to points in a training data set can be a simple yet effective way of classifying new points. Expected output for EPI values - list of D1, D2 or Q values for each species. % Euclidean / SQUARED Euclidean distance. Say a gaussian process regression take with predictor X in 2D, i. 欧氏距离(Euclidean Distance) 欧氏距离是最易于理解的一种距离计算方法，源自欧氏空间中两点间的距离公式。(1)二维平面上两点a(x1,y1)与b(x2,y2)间的欧. I want to measure the distance in every point in X to every point in Y where each point in X coresponds (maps) to one point in Y, regardless of the specific order the points initially started out in. Si 'maximal', pdist2 intenta asignar suficiente memoria para una matriz intermedia entera cuyo tamaño es MX por MY, donde MX es el número de filas de los datos de entrada X y MY es el número de filas de los datos de entrada Y. [D,I] = pdist2 (X,Y,distance,‘Smallest’,K) 生成 K-by-my 维矩阵 D 和同维矩阵 I，其中D的每列是原距离矩阵中最小的元素，按从小到大排列，I 中对应的列即为其索引号. When working with a large number of. Warning: Converting input data to single. D can be the output of pdist or pdist2, or a more general dissimilarity vector or matrix conforming to the output format of pdist or pdist2, respectively. Now, it is confirmed that I do not have a license. out. These are the top rated real world Python examples of utils. You can specify DistParameter only when Distance is 'seuclidean', 'minkowski', or. Free MATLAB and Simulink learning resources include interactive online courses, documentation and code examples, and how-to videos on product capabilities. Y = pdist (X, 'canberra') Computes the Canberra distance between the points. It can be calculated as follows: D = A*B' + (1-A)* (1-B)'; The final distance measure can be done by testing for each pair. pdist(X, metric='euclidean', *, out=None, **kwargs) [source] #. . :heart::coffee: Deep Learning of Binary Hash Codes for Fast Image Retrieval (CVPRW15) - caffe-cvprw15/precision. The Chebyshev distance between two n-vectors u and v is the maximum norm-1 distance between their respective elements. for example,I have a binary image like this. Because symbolic variables are assumed to be complex by default, the norm can contain unresolved calls to conj and abs. trainGroup = dominantGroup(cluster); % Compute the percentage of test points in each group that match %. for low dimensional points (3 in this example) it should be more efficient to. caseread. ), however at the end, it shows an important message. 38066 0. Data can be combined with base map. It seems that the pdist2 version lacks in efficiency due mainly to the element-wise squares, while Matlab now provides the 'squaredeuclidean' option to get this directly. PDIST2 Pairwise distance between two sets of observations. Copy. Z (2,3) ans = 0. for one run, the function was called upon 27,245 times. Keystone paper codes. What is the computacional complexity in asymptotic notation, O(n) , for the function "pdist2" ? 0 Comments. example. Copy. . From help pdist2: 'cosine' - One minus the cosine of the included angle between observations (treated as vectors) Since the cosine varies between -1 and 1, the result of pdist2 (. I have some matlab code as follow, constructing KNN similarity weight matrix. clear A = rand (132,6); % input matrix diss_mat = pdist (A,'@kullback_leibler_divergence'); % calculate the. I want you to clear one thing as I noticed now though I changed bins to 59 but still number of columns in color image remains 1024 only I displayed it on command prompt. Show -1 older comments Hide -1 older comments. 2种计算方式，一种直接利用pdist计算，另一种. The dot of the i will have a lower y value of its centroid than the body of the i. The code seems to run fine, but when calling predict I get the following warning: Theme. pydist2 is a python library that provides a set of methods for calculating distances between observations. 使用四个预处理器指令来控制条件编译：. I'm sorry, you are correct. But pdist2 might have a lot of. D = pdist2 (X,Y,Distance) returns the distance between each pair of observations in X and Y using the metric specified by Distance. Matlab - Not getting the expected result. Given a matrix A of size [N,3] and a matrix B of size [M,3], you can use the pdist2 function to get a matrix of size [M,N] containing all the pairwise distances. metricstr or function, optional. It computes the distances between rows of X. You will use the clustergram function to perform hierarchical clustering and generate a heat map and dendrogram of the data. 的样本平均值. Copy. 9448. Réponse acceptée. . D = pdist2 (X,Y,Distance) returns the distance between each pair of observations in X and Y using the metric specified by Distance. The points are arranged as m n-dimensional row vectors in. Walter Roberson on 7 Jun 2017. E=pdist2（X，Y-mean（X），'mahalanobis'，S）. I want the haversine distance to be more specific. You could save half the time by computing each pair only once. % ZJ is an m2-by-n matrix containing multiple observations. Can someone help me to draw lines between a central point to the all others. If you are getting the matrices as an output from some code, I strongly recommend you directly store them. n = norm (v) returns the 2 -norm of symbolic vector v. 59289 0. The Canberra distance between two points u and v is. of matlab I do not have the pdist2 function. You are using pdist2 with two equal input arguments ( X and Y are equal when you call kernel ). Fowzi barznji on 16 Mar 2020. It shows a path (C:Program FilesMATLAB. MY-by-N data matrix Y. B = [38. View self-paced courses | Search documentation, examples, and videos. D = pdist2 (___, Name,Value) 使用. Sign in to your MathWorks Account or create a new one. t D (i,j) is contains the number of matches between the sample i in A and the sample j in B. Teams. Vectorization speed-up for row-wise norms of two matrixes. Mahalanobis distance in matlab: pdist2() vs. Vectorizing distance to several points on Octave (Matlab) 1. longitude. Nowadays you are probably better of using Matlabs fast compiled version, pdist2; which is about 200% faster when the number of vectors are large. The. Function File: pdist2 (x, y, metric) Compute pairwise distance between two sets of vectors. Computes the distance between m points using Euclidean distance (2-norm) as the distance metric between the points. pdist1 and pdist2 The library can compute distances between pair of observations in one vector using pdist1, and distances between pair of observations in two vectors using pdist2. 如果输入的是冗余的距离矩阵，将返回简洁的距离矩阵. Copy. If you want the cosine, use 1-pdist2 (matrix1,matrix2,'cosine'). In the meantime, try the code below and if it helps you click on the Vote button near my top answer. D = PDIST2(X,Y) returns a matrix D containing the Euclidean distances between each pair of observations in the MX-by-N data matrix X and MY-by-N data matrix Y. d(u, v) = max i | ui − vi |. Contribute to guy531/keystone development by creating an account on GitHub. Set the minimum Euclidean distance between clusters. 女鬼剑第五职业曝光，预计2021年下半年开放！, 视频播放量 297098、弹幕量 191、点赞数 2977、投硬币枚数 60、收藏人数 188、转发人数 1005, 视频作者 旭旭姥姥6868, 作者简介 合作qq1179267940 狗托水友交流3群：297210828，相关视频：第五件红18成了！！！宝哥红眼全身18还在继续中！If you have to implement the distance yourself (school assignment for instance) this is of absolutely no use to you, but if you just need to calculate the distance as an intermediate step for other calculations I highly recommend d = Pdist2(a,b, distance_measure) the documentation is on matlabs site. However, generally the manual calculation is slightly faster or. 49140 0. Copy. Sir, actually the block[50 X 6] contains 'minutiae' information which contains the following data in columns [X, Y, CN, Theta, Flag, 1]and rows contains number of minutiae information on the dorsalhandvein. pdist2 Pairwise distance between two sets of observations. m. 0. See Notes for common calling conventions. Learn more about custom distance function, pdist, pdist2, @distfun, divergence, kl divergencescipy. y = squareform (Z)Dear Gentlemen i face problem when i use pdist2 function of hamming distance between two binary images in same size, the output result is an array not a percentage value, where i want to use hamming distance to calculate the percentage difference between two binary images:Hi, please I want to calculate the distance. – Nicky Mattsson. I had declared 2 arguments in the function, but the signature for the function in the main file still had just one argument. Copy. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. pdist2 computes the distances between observations in two matrices and also returns a distance matrix. However, manually defining the cell array is a limitation here. 78874218621840] the other has 7 sets . [D,I] = PDIST2. 0. % Get the value from column 1. Learn more about matrix manipulation, distance, pdist2, matlab function, indexing, matrix, arrays MATLAB I was wondering if there is a built in matlab fucntion that calculates the distance between two arrays that don't have the same column number like in pdist2? I was told that by removing unnecessary for loops I can reduce the execution time. Minkowski distance and pdist. Return the Cholesky decomposition, L * L. Fit a GPR model using the custom kernel function, kfcn . spatial. 比如说我们描述一个人，可以使用的特征很多，身高，体重，性别等等，这些特征往往都会有相应的值，身高 (180 cm)，体重 (70 kg)，性别 (男，女)。. sum (X ** 2, axis = -1) K = ne. Learn more about optimization Navigation Toolbox, Statistics and Machine Learning Toolbox. D = pdist2 ( X,Y, Distance, DistParameter) 指定的度量返回距离。. An m A by n array of m A original observations in an n -dimensional space. In oppsite to this, sqrt(sum(t . m. pdist2: Compute pairwise distance between two sets of vectors. It computes the distances. . Hi everybody, i have two 3D matrix A and B with different lengths. Everything compiles fine without errors etc. Not sure how to explain sqrt() to you but the formula is just basically the Euclidean/Pythagorean distance formula for a distance between two points. if i go like this the matrix size increase, so I want to reduce minutiae information which is in row. 下载并在您的桌面端上安装。. There are two main classes: pdist1 which calculates the pairwise distances between observations in one matrix and returns a distance matrix. . D = pdist2(X,Y) returns a matrix D containing the Euclidean distances between each pair of observations in the MX-by-N data matrix X and function Distance = euclidean (x,y) % This function replaces the function pdist2 available only at the Machine. D = pdist2 (X,Y,Distance) returns the distance between each pair of observations in X and Y using the metric specified by Distance. distance import pdist, squareform # my list of strings strings = ["hello","hallo","choco"] # prepare 2 dimensional array M x N (M entries (3) with N. Start at the beginning of border poly point 0: Find the line where border [i]. This can be modified as necessary, if one wants to apply distances other than the euclidean. 0. Sorted by: 1. Sign in to comment. The Hamming distance between two vectors is the percentage of the vector components that differ. D can also be a more general dissimilarity vector or matrix that conforms to the output format of pdist or pdist2, respectively. I need to build a for loop to calculate the pdist2 between the first row of A and all the rows of B, the second row of A. The equivalent. The most efficient pairwise distance computation. You can use the pdist2 MATLAB / Octave function to calculate pairwise distances between two sets of observations. Learn more about Teams描述. I have a matrix. The distance between each sample in A and each sample in B can be calculated as follows: First, define a matrix D of size 75x50, s. pdist2 Pairwise distance between two sets of observations. Pass Z to the squareform function to reproduce the output of the pdist function. 3 Comments. We can use it as follows to perform the same computation as above: import numpy as np import numexpr as ne X_norm = np. Learn more about matrix manipulation, distance, pdist2, matlab function, indexing, matrix, arrays MATLAB I was wondering if there is a built in matlab fucntion that calculates the distance between two arrays that don't have the. There will only be one smallest distance. In particular, we validate histogram clustering. sir is there any function to reduce row size. image = 1 0 0 0 0 1 0 0 0. For a dataset made up of. . plot (xi,t1,'r',xi,t2,'b'); legend ( {'Manual','Pdist2'}) Which probably suggests that any differences in time between pdist2 and manual calculation are negligible and more dependent on the current background state of the CPU. 0 installed and run with flatpak, I can install the statistics package from Octave Forge, and the results are the same as others have shown here: >> D = pdist2 (X, Y) D =. 1. - GitHub - nolanbconaway/pairdist: A MATLAB function to compute weighted pairwise distances. D = pdist2 (X,Y,Distance) returns the distance between each pair of observations in X and Y using the metric specified by Distance. procrustes: Procrustes Analysis. > In pdist2 (line 253) In ExhaustiveSearcher/knnsearch (line 216) In ClassificationKNN/score (line 428) In ClassificationKNN/predict (line 713) Relevant Code Below: (Any missed out is just the. pdist2 is optimized to return the distance from each of the points in the first argument to each of the points in the second argument, so if you only want one distance then only pass a single point to each. example. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. Mapping Toolbox supports a complete workflow for managing geographic data. which -all pdist will list all the pdist MATLAB files in your MATLAB path. But pdist2 might have a lot of overhead. For example, you can find the distance between observations 2 and 3. Use kmeans to create clusters in MATLAB® and use pdist2 in the generated code to assign new data to existing clusters. Note. I'm trying to use the pdist2 function and keep getting this error: "??? Undefined function or method 'pdist2' for input arguments of type 'double'" The 'double' part changes depending on what data. The most efficient pairwise distance computation. remoteBlockExecutionPlain (line 49) In spmdlang. Copy. Output argument "h" (and possibly others) not assigned a value in the execution with "getColorHist" function. comparison of two histograms using pdist2. % Autor: Ana C. mat file and we'll show you how you can use pdist2() to find close points. To follow along with this guide, first, download a packaged release of Spark from the Spark website. To check the existence of a global variable: if 'myVar' in globals (): # myVar exists. distfun must. BUT: The code shown here is 10-100 times faster, utilizing the. The attacks. But the problem is the Matlab function for that, "pdist2" only takes 2 matrices of size M1 x N and M2 x N and not anything else, so I plan to convert the 128 x 128 x 3 matrix to a (128 * 128) x 3 one. I'm trying to calculate Haversine distance but I don't know how to apply the funtion in this case. Compute distance between each pair of the two collections of inputs. The builtin function `pdist2` could be helpful, but it is inefficient for multiple timeframes data. How to separately compute the Euclidean Distance in different dimension? 2. Create a for loop that specifies the number of clusters k for each iteration. so is for the different group, not for the same. I want to compute the distance between two vectors by using Jaccard distance measure in matlab program. % space. In human motion analysis, a commond need is the computation of the distance between defferent point sets. i. One matrix has 2 sets of coordinates A= [0 0, -5. 相同的结果，我想有两种不同的方法来计算两组数据之间的马氏距离，就像你上面解释的那样： 1） 将样本集中的每个数据点与. to see if you have multiple pdist2, and use pathtool to make sure that the Statistics Toolbox one is earlier on your search path. However, even though the number of arguments is correct, I still get the. The builtin function `pdist2` could be helpful, but it is inefficient for multiple timeframes data. Fowzi barznji on 16 Mar 2020. Distances using Eigen. Pass a single point for each of the first two arguments to pdist2 and the result will be a single distance. pdist2() is going to return a 2D array that is number of rows in color_table by number of rows in the reshape()For a proyect I want to use pdist2 (Pairwise distance between two sets of observations) but I need an specific function. Clustering. example. pdist2 Pairwise distance between two sets of observations. In a MATLAB code I am using the kullback_leibler_divergence dissimilarity function that can be found here. I was wondering if there is a built in matlab fucntion that calculates the distance between two arrays that don't have the same column number like in pdist2? For example if matrix A was 102x3 and M. Share. In any case you could use this: function MD = my_MahalanobisDistance (X, Y) [nX, mX]. After reading through the documentation, it is a very versatile tool. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. %. 判别分析时，通常涉及到计算两个样本之间的距离，多元统计学理论中有多种距离计算公式。MATLAB中已有对应函数，可方便直接调用计算。距离函数有：pdist, pdist2, mahal, squareform, mdscale, cmdscale 主要介绍pdist2 ,其它可参考matlab help D = pdist2(X,Y)D = pdist2(X,Y,distance)D = pdist. 78874218621840] Your third party file c:\toolbox\classify\pdist2. Description. I studied about pdist2 function , I used it : Theme. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. Pdist2 inside for. Y = pdist (X, 'canberra') Computes the Canberra distance between the points. You can also do this using a combination of pdist2 ⬥ and min instead of knnsearch (in line 6). Sorry - that's what I get for tossing something off the top of my head and not actually testing it. Neal. I have two sets of data phi1 and phi2, and I'd like to know what the pairwise distances are for these two sets. Teams. In this case however, I want to create a graph where the edges of the square are wrapped, that is, the leftmost (or topmost) points are also connected to the. Ask Question Asked 8 years, 5 months ago. I was told that by removing unnecessary for loops I can reduce the execution time. fullFileName = fullfile (myfolder, baseFileName); %loads the data for the file that I want to compare to baseline neutralRMS. Learn more about matrix manipulation, distance, pdist2, matlab function, indexing, matrix, arrays MATLAB. % accept a matrix ZJ with an arbitrary number of observations. This makes using pdist2 or Luis' solution for your particular purpose equal to flying from London to Paris via the South pole, without even enjoying the view--not very fast, and indeed quite wasteful :) A loop tailored to your specific use case is going to be fastest and most memory efficient. How to find closest Lat/Lon on a grid to an. Learn more about matlab, pdist2, matrixpdist2 function. % requiring few or no loops. In human motion analysis, a commond need is the computation of the distance between defferent point sets. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. D = pdist2 (X,Y) returns a matrix D containing the Euclidean distances. as arguments a 1-by-n vector XI, corresponding to a single row of X, and an m2-by-n matrix XJ, corresponding to multiple rows of X. Let's say that the pixel to pixel spacing is 64 microns, and you want the distance between the 34th blob and the 78th blob. I have written a function that is supposed to do the following: Take the distance between the two sets using pdist2 which code is shown here. This norm is also. pdist and pdist2 can calculate the city block distance. ^2) K_sigmoid = tanh (gamma*X*Y' + b); X and Y are matrices where the rows are the data points (vectors). I simply call the command pdist2(M,N). Therefore, D1(1,1), D1(1,2), and D1(1,3) are NaN values. Sign in to answer this question. Run this line of code which should open the directory where this function is stored and look for that function (for Windows) winopen (fullfile (matlabroot,'toolboxoptimoptim')) If the file exists, the path has somehow been removed. Use kmeans to create clusters in MATLAB® and use pdist2 in the generated code to assign new data to existing clusters. {"payload":{"allShortcutsEnabled":false,"fileTree":{"classify":{"items":[{"name":"private","path":"classify/private","contentType":"directory"},{"name":"Contents. e. Mahalanobis distance is also called quadratic distance. I'm making a set of functions in C for simulate a microcanonial ensamble (a periodic-bounded box with N particles with fixed Energy and Volume). Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. axis: Axis along which to be computed. It will take the distance between the two sets at the beginning. Examplesdpav4. Write case names to an ascii file. Learning Compact Binary Descriptors with Unsupervised Deep Neural Networks (CVPR16) - cvpr16-deepbit/precision. [W,K] = pdist2(IJ,IJ, 'chebychev', 'Smallest',9); From here, columns of W containing only 1 can be selected and can be matched with columns of K to get the adjacency matrix. – am304. pdist2 (X,Y,Distance): distance between each pair of observations in X and Y using the metric specified by Distance. See Notes for common calling conventions. * t, 2)) creates the complete t . D = pdist2 (X,Y,@CalcDist) function D2=CalcDist (ZI,ZJ) % calculation of distance. No. mat file and we'll show you how you can use pdist2() to find close points. 코드 생성을 위해, 군집 중심 위치와 새. pdist2 function. For a dataset made up of. Pass Z to the squareform function to reproduce the output of the pdist function. In this project, we are going to calculate the camera projection matrix and fundamental matrix. 52181708330649 5. Now I want to create a mxn matrix such that (i,j) element represents the distance from ith point of mx2 matrix to jth point of nx2 matrix. NaN NaN NaN NaN 1 2 2 NaN 3 1. Pdist2 inside for. Use. If you want to order the points from B by their distance to the r th point in A then you can sort the r th row of the pairwise distance matrix. Ultimately, the idea is that all the sparse. However, generally the manual calculation is slightly faster or. I know the distance(lat1,lon1,lat2,lon2) command is the suitable for this but I want to use pdist2 command. Equal rows have distance 0. In this workflow, you must pass training data, which can be of considerable size. But in your case the matrix has only rank 1. Then sum() is fed with the complete result, and throws the result again to the RAM. Calculates the distance between sets of vectors. 8k 7 7 gold badges 57 57 silver badges 100 100 bronze badges. I would like to use the command pdist2 in order to compute distance between two geographical coordinates. , (2, , corresponds to the distance between objects. 1. 这里 X 是 mx-by-n 维矩阵，Y 是 my-by-n 维矩阵，生成 mx-by-my 维距离矩阵 D。. Share. Function File: pdist2 (x, y) Function File: pdist2 (x, y, metric) Compute pairwise distance between two sets of vectors. BUG (??) :pdist x dist x pdist2. CHAPTER ONE PYDIST2 pydist2isapythonlibrarythatprovidesasetofmethodsforcalculatingdistancesbetweenobservations. 一、pdist 和 pdist2 是MATLAB中用于计算距离矩阵的两个不同函数，它们的区别在于输入和输出以及一些计算选项。选项：与pdist相比，pdist2可以使用不同的距离度量方式，还可以提供其他选项来自定义距离计算的行为。输出：距离矩阵是一个矩阵，其中每个元素表示第一组点中的一个点与第二组点中的. This repository contains the MATLAB scirpts, which perform power analysis attacks on the AES-256 RSM (v4) in DPA contest v4. This way, you offload the bother of vectorization to the people who wrote MATLAB/Octave (and they have done a pretty good job of it) X = rand (10,3); Y = rand (5,3); D = pdist2 (X, Y); D is now a 10x5 matrix where the i, j th. end. How can I compute the above weighted kernels efficiently in Matlab?scipy. Distance 和 DistParameter 。. Hello StackOverflow community, I'm having a hard time wrapping my head around a problem I'm having in MATLAB. D = pdist2 (X,Y,Distance,DistParameter) returns the distance using the metric specified by Distance and DistParameter. For example the not weighted RBF and sigmoid kernel can be computed as follows: K_rbf = exp (-gamma . D = pdist2 (X,Y,@CalcDist) function D2=CalcDist (ZI,ZJ) % calculation of distance. Then pdist returns a [3 x 3] D matrix in which the (i, j) entry represents the distance between the i-th observation in X and the j-th observation. Currently avaliable codes in FEX are also insufficient as they can only compute (squared. In human motion analysis, a commond need is the computation of the distance between defferent point sets. distfun must accept a matrix XJ with an arbitrary number of rows. Theme Copy D = pdist2. gitattributes","path":". The Canberra distance between two points u and v is. {"payload":{"allShortcutsEnabled":false,"fileTree":{"":{"items":[{"name":"FastMICE_ConsensusFunction. @AliEmara Have you noticed if Matlab is using virtual memory (disk cache) due to lack of physical RAM? If that's what's slowing things down, you could use pdist2 several times, passing it the whole matrix and small chunks of the same matrix –pdist2 两组观测之间的成对距离 句法 D = pdist2(X,Y,Distance) D = pdist2(X,Y,Distance,DistParameter) D = pdist2(___,Name,Value) [D,I] = pdist2(___,Name,Value) 描述 D= pdist2(X,Y,Distance)中的每一对观测之间的距离。X和Y使用Distance. square is not for squaring a value, it returns the values of the square wave. spatial. It's hard to tell without knowing what dtw2 is. Create a matrix with three observations and two variables. Meta. My one-line implementation of both MATLAB's pdist and pdist2 functions which compute the univariate (pdist) or bivariate (pdist2) Euclidean distances between all pairs of input observations. Instead, I am able to find the distance from the boundary of the image to one of the objects.